NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183757_1002890

Scaffold Ga0183757_1002890


Overview

Basic Information
Taxon OID3300029787 Open in IMG/M
Scaffold IDGa0183757_1002890 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6527
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_018
CoordinatesLat. (o)35.7528Long. (o)14.2765Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002485Metagenome / Metatranscriptome555Y
F002768Metagenome / Metatranscriptome531Y
F012834Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0183757_100289017F012834N/AMKERFTDLAWTDGDFNKATTSPSQTALQNSIWFIKYHLSPHLNFKPEKPSISFEAGKFVHEWFQQILIGQAEIKDVELHFKTFISNFDFGERNNIKAQFILRNIKGYVERHLMCINELSDNFSDWKVEEPLSDWYDDKYMGQTLNLATEGYIDCVNHNEKKITEHKNRFGSARNSPLKINRKDSNLNRIGDWVYSKSQLIKQPQFTHCIQTSVYSKHFKNKYKPYLIYVSEADYTIFTPDNCWELTPKGLEYFFRKFIQINIKRQELLRAANGSIKRLACLIDVDWSEIRNYKSNFMLKNYEEEDMQRLEDFYEKL
Ga0183757_10028902F002485N/AMKTQIDQKSLYQSVQGDKIIFYSYNTTVAVKTPVDTYVSENVWSVTTAKHLNRIEELTGSNRDYRMRYKDFRQFCIDNNINKHYC
Ga0183757_10028908F002768GAGMKSSWWKLTIEDYPNYKPSDVDLEHIAEMIKQGYDNGQLIQEEEDQEND
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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