Scaffold Ga0183757_1000233

Overview

Basic Information

• Taxon OID: 3300029787
• Scaffold ID: Ga0183757_1000233
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33534
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_018
• Coordinates
  • Lat. (^o): 35.7528
  • Long. (^o): 14.2765
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010199	Metagenome / Metatranscriptome	307	Y
F016326	Metagenome	248	N
F017401	Metagenome	241	Y
F020600	Metagenome	223	N
F056910	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183757_100023317	F017401	N/A	MVNVCMATPAGQPQVNKDNQLCRKLGTLARTDAYVPQCVDRKSSNFLTIILEFIAVLAIMLGSIIAAWCVAVIL
Ga0183757_100023319	F056910	GAGG	MPTKIKPNAMKRSDAADFCGISVSQFGKMIRNGTMPTARNAGGAKIWLRTELEDALTALALDGEKDEECDTNKVFGIAT
Ga0183757_100023328	F020600	AGGAG	MTTSTDLILQRTAQRLPVDVLRPGAEAALGKAMLEFEREQAKQVRRQVLPIDRTYVRRQVNDDAIILLNEMRKAGPCTAKYLAERLSISTHKSANLIKSLTVAGLAEKVCITRRSVVQEDNLSYRVGHRERNDCWVYKAWEQ
Ga0183757_100023336	F016326	GGTGG	MMYKKKNIAGEMGAKASQPAKRRQTVDPLERASQKMEGRMQGGDPKKAKRKSMMNSYGLS
Ga0183757_100023338	F010199	GGA	MKQIEDLKLAYRRTFNSEDGETVLADLKTRFAFEQTTFVQGDPHQTAFNEGQRSAILLIARMLSEDAKPKR