NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167330_1015542

Scaffold Ga0167330_1015542


Overview

Basic Information
Taxon OID3300029781 Open in IMG/M
Scaffold IDGa0167330_1015542 Open in IMG/M
Source Dataset NameBiosolids microbial communities from sewage treatment plant in Sweden - SWESTP11 - Uppsala-digested 112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Gothenburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1593
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location NameSweden
CoordinatesLat. (o)59.844519Long. (o)17.659844Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045729Metagenome / Metatranscriptome152N
F088844Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0167330_10155422F088844N/AMRSMTKFDDYFMKKGRIVSRETIGQNSEFIIYRVIGDNWKIERASKFFNDFYKNVNFRVSFLLCNVVIVRLREKNLCPYCVEYFENLTQIYKHLKSWHC
Ga0167330_10155423F045729N/APLYQLLYDKGFRSIEVNDLQRFIIVSETELRFKPAKNNRYRTFLVSDFPSDFIEAIRKNSPKYLSISCNTMRYTFNNLYKYRKVFSGDKAISLHLFRYNFCRKLLDSGETSVQIAEKLGEIDLSNLDSYLYADIYRY
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