Scaffold Ga0245159

Basic Information
Taxon OID	3300029730 Open in IMG/M
Scaffold ID	Ga0245159_100250 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36666
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029730 Open in IMG/M

Scaffold ID

Ga0245159_100250 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36666

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	84977
Total Scaffold Genes	108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (22.22%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

84977

Total Scaffold Genes

108 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (22.22%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (20.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location Name	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

United Kingdom: London

Coordinates

Lat. (^o)

51.5

Long. (^o)

-0.12

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F064817	Metagenome	128	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245159_10025055	F064817	N/A	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKENYQAAKDLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
Ga0245159_10025059	F101357	AGG	MNLNNITTALKAGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLNANQYKLYPLLLDILKISLKGDFHNYSNTSNIHYEGNTSNIHYEGGKFPSMLTIQLFNLEF
Ga0245159_10025064	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYMGNIPTVPDLEKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIEELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSQHKR
Ga0245159_10025069	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWVKLLGVALMMLLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0245159_10025070	F094005	N/A	MKKETIKLKEGDQVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTTENEQKYNSFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0245159_100250

Overview

Ecosystem & Geography

Associated Families

Sequences