Scaffold Ga0245223_101856

Overview

Basic Information

• Taxon OID: 3300029688
• Scaffold ID: Ga0245223_101856
• Source Dataset Name: Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35562
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9387
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location

• Location Name: United Kingdom: London
• Coordinates
  • Lat. (^o): 51.5
  • Long. (^o): -0.12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245223_1018561	F042095	N/A	SNKFVWFTTWDRALRNYYSDDYNYVPDPVVDNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRNDYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYIPVDNHLYADGRRDVRRAVAIDFTCDIYYAEIKTCKMTAFPIVDTPGLESLIVHGTTYANDGIPVDKLSRSKKLTYISFENVGTRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQELRLSSCYLDRYIKEFNDLPKLTLLSITPGPSDMWNYSDINTLPFFEVDKINPSINTFTFLDDWMNGERRTNWNDDNMSDRGLDHLTGFSVSHSNSIRMDKLPDYIYEMRSITWFGVNCSTHSQKRSDDFVDSFYRLVTEWDQITMTSVAKDGKRNQFYGLTVSMYSSTFPNENQRHSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQKWTIKPV
Ga0245223_10185611	F106193	N/A	VGCNTCKEKALKAERERIERSMMNHSSSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGYTKYIKP
Ga0245223_1018563	F089590	AGTAGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWLREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDTFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS
Ga0245223_1018564	F075481	AGAAG	MMRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVMDRKIVEIKTSDLNADIVITEREFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL