Scaffold Ga0206099_112970

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0206099_112970

Scaffold Ga0206099_112970

Overview

Basic Information
Taxon OID	3300029652 Open in IMG/M
Scaffold ID	Ga0206099_112970 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from Anza Borrego desert, Southern California, United States - S3_20-13C (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.305	Long. (^o)	-116.2547	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F009507	Metagenome / Metatranscriptome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0206099_1129701	F009507	N/A	VADIVVVDIGIKGVVVPVVVEESSRDWEAVFLRDKHVGLGLFASIAEQLGTERSTNGQVELFVVVVTHADLAERNITTFLLAGVLHVSEDGNVLVLVAKNELRDEESSVLADFVDEEVSTESCALFVVFIGDELESTEVLHLVVHGGNSFPPVGCAAV

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