Scaffold Ga0135266_102055

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0135266_102055

Scaffold Ga0135266_102055

Overview

Basic Information
Taxon OID	3300029632 Open in IMG/M
Scaffold ID	Ga0135266_102055 Open in IMG/M
Source Dataset Name	Marine harbor viral communities from the Pacific Ocean - SMB3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1078
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	34.536667	Long. (^o)	122.141667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024136	Metagenome	207	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0135266_1020552	F024136	AGGAGG	MSSEFSAFKVPKEKDFLKVIEDAEDAGVLDKTAKAVNNPLSWLRFIPSLGVSVRQAEKQAEEQGIQNPLFQKGFKETDEQRDLAKELDRGIIDGPVRAVKGVLEFLTAGIDKGLDTNLTNKLDGATRKFLLEHGNPNTCKEIVTGKL

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