Scaffold Ga0135266_101521

Overview

Basic Information

• Taxon OID: 3300029632
• Scaffold ID: Ga0135266_101521
• Source Dataset Name: Marine harbor viral communities from the Pacific Ocean - SMB3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1154
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 34.536667
  • Long. (^o): 122.141667

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F059349	Metagenome / Metatranscriptome	134	Y
F087220	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135266_1015211	F059349	AGGAGG	LGQEFVIKSQNLEDKINQLLPSQGGFAPGVDLSASTTVIPVVDLTEAAEGSGLRQDLQVAFSLNDVTSFTVNSATSTLINTTGYYRVFGNIAMENRSTADGVANFALTDRDWETM
Ga0135266_1015212	F000613	AGGAG	MPLVKKRLSVAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTMDFTVNNAEFSKNASVSAIVTGEPFGWNGNYVMNDMVTTGQVRNRPIITFTNGTGATRTIDVAVFIGG
Ga0135266_1015213	F087220	N/A	IIGGARSLLKSPAGQLALGAGAGGALSLMAPDGKKMRITRKMKSQARTVLNLAGGNISLAADILNISDEMLVQVLLKRFRNDGPVVTKAALRKTKSTIRRLHSMQDVLKSITPTAAGRRRAPMKRATTTTLIKN