NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0245134_102460

Scaffold Ga0245134_102460


Overview

Basic Information
Taxon OID3300029618 Open in IMG/M
Scaffold IDGa0245134_102460 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_36006
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14821
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (89.47%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location NameUnited Kingdom: London
CoordinatesLat. (o)51.5Long. (o)-0.12Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042910Metagenome157N
F043413Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0245134_10246011F042910AGGAGGLADRLYCALNGTTLRDLDARIHLLDVEELAPTVRTVTASRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTIAPGAAIRIHHNAGVFAAEMVSDDSTVSILPYRTPDSADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC
Ga0245134_10246017F043413AGGGGGMTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKMASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKQVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDGTGSWSDSPFGFDGVLWDDDMQSPPEGAPIAWTMTFELLQPVWKVEYLPDAQYQALLAGGADTLEAYVQNNWRKHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIGMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGETDSGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE
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