Basic Information | |
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Taxon OID | 3300029548 Open in IMG/M |
Scaffold ID | Ga0245003_100254 Open in IMG/M |
Source Dataset Name | Human fecal microbial communities from Shanghai, China - P092V1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Beijing Genomics Institute (BGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 85113 |
Total Scaffold Genes | 110 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (22.73%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China |
Source Dataset Sampling Location | ||||||||
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Location Name | China: Shanghai | |||||||
Coordinates | Lat. (o) | 31.2112312 | Long. (o) | 121.4647709 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F032312 | Metagenome / Metatranscriptome | 180 | N |
F044555 | Metagenome / Metatranscriptome | 154 | N |
F060985 | Metagenome / Metatranscriptome | 132 | N |
F064817 | Metagenome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0245003_10025432 | F064817 | N/A | MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNTSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETV |
Ga0245003_10025444 | F044555 | N/A | MKTTNPSSRITISQNGNQILTCKVYKEPNYILSMSNEEILELISGLDYIGNLPTVPDLGKPIEIQVSTTRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKDTISKFQAQYNIQEINPYLQDILQNPGDLVSLSQHHKI |
Ga0245003_10025450 | F060985 | GGA | MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHAETNLGMCKIFDNQDHGFWHSVIKPWFQLERFGITHLWFTSGFSFIGYGEYHTIRGNRWLKTPIDKIDRENRIFGYWFPPYKKVYPT |
Ga0245003_10025451 | F032312 | N/A | MPKIKDYDEDLSAPKILRRRDNKGRFIKKDLPPYLGSEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMMLLWPIVFIYALNDGIDGYPFKKYAIPYIFILVAWFIIFLYGLVS |
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