Scaffold Ga0245039

Basic Information
Taxon OID	3300029545 Open in IMG/M
Scaffold ID	Ga0245039_100323 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Shanghai, China - P111V1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029545 Open in IMG/M

Scaffold ID

Ga0245039_100323 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from Shanghai, China - P111V1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	64510
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (37.80%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (45.45%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

64510

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (37.80%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (45.45%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location Name	China: Shanghai
Coordinates	Lat. (^o)	31.2112312	Long. (^o)	121.4647709	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

China: Shanghai

Coordinates

Lat. (^o)

31.2112312

Long. (^o)

121.4647709

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F075481	Metagenome	119	N
F078006	Metagenome	117	N
F080673	Metagenome	115	N
F083452	Metagenome	113	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F093883	Metagenome	106	N
F106193	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0245039_10032314	F106193	N/A	VGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMLDPLQTMERDVVSIYKQVRTKGGGVGVSYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRSIYIKP
Ga0245039_10032321	F075481	AGAAG	MIRLRISLKAVFCLGLSLSLSSCGSRRQVSETSIDSRLISRIETMIDEVVDRKIVEIKTSDLNADIVITEREFDTDKDVDPTTGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGVKDIDKKTDIKHKDVDDKKESKWPIAVTSISVLLILLGLIYLLKKMKVL
Ga0245039_10032324	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVNNPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDDYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRTTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLKTLDLSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITNFDFLNDWVSGEVRTGWNDDNMSGRGLDHLTGFFVYHSNSIRVDKLPDYIYEMRSITWFVMNYSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYGSQYPDENQRPSGTEQTPEGFVKGSSNGFPATPMEKIYVLKNNYAQRWTIKPA
Ga0245039_10032331	F089591	AGGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEAADFVMWEAKNENIHELLGDENNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILNMVTKQFNLNENELYRYRMDKDNVASFK
Ga0245039_10032332	F089592	N/A	MKEILKSKEVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDKLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE
Ga0245039_10032338	F093883	N/A	MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKEMKANATGKTKAD
Ga0245039_10032343	F058555	N/A	MSGTKIALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYKHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIGIGMQEISQSTIYRYISMFLDMCKKSISDLYDEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLHILISTDYIINVFLGKKSAEMSKAG
Ga0245039_10032363	F083452	GGA	MSGRVKIKSKDKDKKPKIDVFKIIENRFKNMNELRDLIDMDPKKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDMIDKYVKRK
Ga0245039_10032367	F057001	AGG	MPIQVPRARANLMTSKDLNKVQNEVKKASEKTLTGAVKAWCQLFKSGKEVNEILKDNDIKVDKDVVPALVALAKDKEVVIQLCKEILPRVNDTFCAYKEIEREYYDKQDQANNSKLPLDKVNDIAVLGDTHKRFGYCEPIAYNDTCSVPYYEVFNGSDKRIVKVAIPIKRYTYNLIAKCITYYLTHPKNDR
Ga0245039_10032374	F080673	N/A	MDEITKLQDEALLYLRDNITKEEAYYILTTENEMTEVLIAKKKGGGKRIKILDMEYTIERDDKLLLFDTDGIIDECLLTSSHIGINMYFRRQDIRDILSKKLEVMEYRYIKIQVDNIPVVEKCRVILDLTGHRVDRNDRDKIYFMFVYYMARLCV
Ga0245039_10032380	F078006	AGGA	MLNQALAGRKESHDRTCADMVRGRFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWQDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLETALDVLNGPLPRWCRSYGVYPRQYDNIDKWYNSDNHNKKLFKEI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0245039_100323

Overview

Ecosystem & Geography

Associated Families

Sequences