Scaffold Ga0183755_1040148

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1040148
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1272
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019665	Metagenome / Metatranscriptome	228	Y
F019666	Metagenome / Metatranscriptome	228	Y
F021511	Metagenome / Metatranscriptome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10401481	F019666	GGAG	MPHIYIPEIFVTQDEYDMIQDNQVPIDCFIANKVRNEEMFVYIQETDATYKRARNYEWSPELSARQIDYVNSQGVSNNLSENPNKRSTICDI
Ga0183755_10401482	F019665	GGAGG	MPFYTYIDDKDMIPYLLDYGWIVTHNTWTDCPLPTYTSMKKAYQHNGNAMIFGEMM
Ga0183755_10401483	F021511	GGAG	MEDITNDAVKAVMSAYTPIEVKTLIHNHDERNFVHHQTTDEIVDFYAEHSEDIHHWLLDDSHAFEYYANAMAAYNYAQAKCKCKHERSALQQEYLKDVVHIFIATVCWDLAASHDMIDMSMEEVENYQLAKELQHAKTKLTVIDGGKK