NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1022660

Scaffold Ga0183755_1022660


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1022660 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2028
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023754Metagenome / Metatranscriptome209Y
F023856Metagenome / Metatranscriptome208Y
F038216Metagenome / Metatranscriptome166Y
F056585Metagenome137N
F071124Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_10226601F038216N/AETIENSHRTLSDAVTMYAIYYSDWTEILEELSQYYKTDEWKNHDHRAELPRHRELNQRRNRALREVQEIGRELRSIGLDVDLCEWANVDDYYEDAA
Ga0183755_10226605F056585AGGAGMARETWEMWADEYQEYYEDETPVYPDDIEEWKQEEQRVIDEVIQAMKGLQA
Ga0183755_10226606F071124AGGMTYEEYELGYYTGDSGDSPEPPEDPETHAMLEHLVEFETEMYRLKCRGRLKICTRRQLERLLIELHGEEWRDAL
Ga0183755_10226607F023856AGGAGMRCRACNRILEETELTKKDTHGDFLDLCGNCLSASAFSGLDSDTMEYYQYEIFTEDEKYDTLY
Ga0183755_10226608F023754GAGGMNMKQPDNAHTKMFGNDGPIFNDAEIIVYYEQHGPAEPVLRIPFWY

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