Scaffold Ga0183755_1022660

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1022660
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2028
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023754	Metagenome / Metatranscriptome	209	Y
F023856	Metagenome / Metatranscriptome	208	Y
F038216	Metagenome / Metatranscriptome	166	Y
F056585	Metagenome	137	N
F071124	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10226601	F038216	N/A	ETIENSHRTLSDAVTMYAIYYSDWTEILEELSQYYKTDEWKNHDHRAELPRHRELNQRRNRALREVQEIGRELRSIGLDVDLCEWANVDDYYEDAA
Ga0183755_10226605	F056585	AGGAG	MARETWEMWADEYQEYYEDETPVYPDDIEEWKQEEQRVIDEVIQAMKGLQA
Ga0183755_10226606	F071124	AGG	MTYEEYELGYYTGDSGDSPEPPEDPETHAMLEHLVEFETEMYRLKCRGRLKICTRRQLERLLIELHGEEWRDAL
Ga0183755_10226607	F023856	AGGAG	MRCRACNRILEETELTKKDTHGDFLDLCGNCLSASAFSGLDSDTMEYYQYEIFTEDEKYDTLY
Ga0183755_10226608	F023754	GAGG	MNMKQPDNAHTKMFGNDGPIFNDAEIIVYYEQHGPAEPVLRIPFWY