Basic Information | |
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Taxon OID | 3300029448 Open in IMG/M |
Scaffold ID | Ga0183755_1022660 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2028 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea: TARA_023 | |||||||
Coordinates | Lat. (o) | 42.1735 | Long. (o) | 17.7252 | Alt. (m) | Depth (m) | 55 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F023754 | Metagenome / Metatranscriptome | 209 | Y |
F023856 | Metagenome / Metatranscriptome | 208 | Y |
F038216 | Metagenome / Metatranscriptome | 166 | Y |
F056585 | Metagenome | 137 | N |
F071124 | Metagenome / Metatranscriptome | 122 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183755_10226601 | F038216 | N/A | ETIENSHRTLSDAVTMYAIYYSDWTEILEELSQYYKTDEWKNHDHRAELPRHRELNQRRNRALREVQEIGRELRSIGLDVDLCEWANVDDYYEDAA |
Ga0183755_10226605 | F056585 | AGGAG | MARETWEMWADEYQEYYEDETPVYPDDIEEWKQEEQRVIDEVIQAMKGLQA |
Ga0183755_10226606 | F071124 | AGG | MTYEEYELGYYTGDSGDSPEPPEDPETHAMLEHLVEFETEMYRLKCRGRLKICTRRQLERLLIELHGEEWRDAL |
Ga0183755_10226607 | F023856 | AGGAG | MRCRACNRILEETELTKKDTHGDFLDLCGNCLSASAFSGLDSDTMEYYQYEIFTEDEKYDTLY |
Ga0183755_10226608 | F023754 | GAGG | MNMKQPDNAHTKMFGNDGPIFNDAEIIVYYEQHGPAEPVLRIPFWY |
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