Scaffold Ga0183755_1022315

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1022315
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2056
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F058518	Metagenome	135	Y
F089518	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10223153	F058518	AGG	MRYKDITVEAEDLECDEIDTIHDAIKNHILDVGIATPKTLTGFNWRLDVRMRMDNYET
Ga0183755_10223154	F089518	AGTAGG	MEYVIHISKKGGECFAYHSTKDKSELDRLVGKYLKMKGITIEVKKRFLS
Ga0183755_10223156	F021206	GGAG	MTTVTLNQLLEIENVLATRKIPSDIEAVTKWKYFSDSKEKWVTLGDQPLHYVLRILTKMKWDNDFKVWQLDKGE
Ga0183755_10223158	F013377	AGAAGG	MTRKILKHWALFYKHGERQFISAPTRKELDSAIFAGAYAPRFDSVTYYVEYERDIKDTRYNQVTEV