Scaffold Ga0183755_1005600

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1005600
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5775
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (90.48%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003051	Metagenome / Metatranscriptome	510	Y
F010318	Metagenome / Metatranscriptome	305	Y
F015812	Metagenome / Metatranscriptome	252	Y
F020816	Metagenome / Metatranscriptome	222	N
F031261	Metagenome	183	Y
F046985	Metagenome	150	N
F051470	Metagenome	144	N
F068823	Metagenome	124	N
F102056	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100560010	F031261	GAGG	MRTKTYVMSVEKNSDEVLEQLNKLQQVRQSVSLLNKHSTKKHYVKCQGRWGRKNPDYNQRTIPFCPLDKAVKWDVYIYQAR
Ga0183755_100560011	F003051	AGGAGG	MRTKILKSKVTIDMSVSEYDTLFKYIGKLESMLNTLHETNDLWLSDVHNLSSLKWELIEMLDAEWNPDTYRYVKRGNK
Ga0183755_100560012	F068823	AGGAGG	MSRTYNEYYFEKLDVMDKLDEIGLLTRLLRIVYKEQGLDTIKYLVCNKTKRKFIWFNDDMMTDIINDIEEGVSYEN
Ga0183755_100560014	F051470	AGGAGG	MSTDNKWIHDYYDERWQHYYDVLCKDIKDIGQVETIADRLAMEDVNNLEMEG
Ga0183755_100560017	F102056	AGGAGG	MNKEFEKELITLLNKYYKSNWDYVWEFVGDSIETKLWLGEETTDEDN
Ga0183755_10056006	F015812	AGGAG	MNRTLYKKLEDICAREYILNKLSATKFRTFVDFLYDDIRTWDEPMNVSEVDIIHRIGEHLSYMVSSLLADTCTGTTHD
Ga0183755_10056007	F046985	GGAGG	MSDLLKLYNESWSEDFDVDVDASKSIKVHVAPKTYAMLVQIGVFNIHSRGIVDWVSKVDVEAIYMNLDFSVDMLLQNYQAIKMAVMLKEYPFRTGYQQQADKIWNNILQHLSEFNPEDAEELRNKLFKRRVA
Ga0183755_10056008	F010318	GGAGG	MNVDSDKPRYIECIYEAFITFDLEELGIDWDNVKDYYIKHGTLYVDFKDGSSEEYEGEQGETDWKWSAQENILTKDWYLVEGLN
Ga0183755_10056009	F020816	GAGG	MKVYEITLGTVIQIDSVDDYAESKEHAIDIMWDRWDVYKDTLEITAVKTWEEDDEC