Scaffold Ga0183755_1005111

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1005111
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6143
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028003	Metagenome / Metatranscriptome	193	Y
F077798	Metagenome	117	N
F081356	Metagenome / Metatranscriptome	114	N
F085559	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10051112	F085559	AGGAG	MTMNLQQQSDECGYALEAFGKVLKNNNIEVEGKPNIELIMEYQKEYKKIEIRNREIENEMNFNFIQSEKSEAYKEWENSWIDWVKSKLKFRRNEN
Ga0183755_10051113	F028003	N/A	MKISQASGFDKYIIMCDKGQGKLVSDYPSYLKFKEVQNALVKISQTPGKTYMFGGEVHEKGMTCSQADRVLDNIFNCKTNMEMISLIRKVARQIGFHEMTLPGKIKWGM
Ga0183755_10051114	F081356	GGA	MGNVREGKYKVVQNYNSVEGALYENEIVQVYDNNTKPGHLRAKDSMGRVWFVPQKYLKKMXCFLK
Ga0183755_10051117	F077798	N/A	MTDINKKFRMIIENEDLFKSNPEAMLRLKYLVDNKKSFKNITKEEIEALYIYLMRHNLPQ