Scaffold Ga0183755_1004648

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183755_1004648

Scaffold Ga0183755_1004648

Overview

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1004648 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6527
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (78.57%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F023319	Metagenome	210	N
F095588	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10046484	F023319	AGGAG	MSKKIKCQKEGCSNKAYPEDMENRASNLLLCDDCYTEIRYLMADYLDIHIQEIKI
Ga0183755_10046485	F095588	AGGAG	MSFKKYKVEIELDFDRRPSKKDVLNRLWDILRDNKVKYKLYKYNNKLYDFVKRSN

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