Scaffold Ga0183755_1004283

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1004283
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6895
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042628	Metagenome	158	Y
F086164	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10042835	F042628	AGGA	MGKYNKSNKNNIFKEEPEISVSEHTVVKKGRKMKMVIPEGKIGYGDVESHAQIAGDLAAKHSDDTKAGQRVYEEVRKKRDSRERGTTVEQNRINMAKQKMAGRMPVIQTFNIQDPVTGQVIAQEFLFMKTDKSGLTRPLKIRVDVQSGKTTEVPI
Ga0183755_10042836	F086164	AGGAG	MAFGHEKLAVDATVRSLTVPVDVNFAQVTVETAAIRYRLDGTDPATAVGVLISAGDSFCIYGVDTLRXXXXIKMVEATSTDSVINVSYGTANNGIHGVIITGTA