NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1003200

Scaffold Ga0183755_1003200


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1003200 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8289
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072428Metagenome / Metatranscriptome121Y
F085729Metagenome / Metatranscriptome111Y
F104032Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100320013F072428GAGGMDLAKTIKRIKELSAILRSETVSDREKAFYEPELHQLIDTLEIPQLIGDLNNEYIS
Ga0183755_10032006F085729AGGAVWFSALGFPHVALEFPYKRQSPLTKRVKTYKNIKQVWEEIEKLVVKWKDTNYTLGRNLYFHLPLFMDPKWIIEEEDNILIREYNWIKEFNIPLAQDLDSADARRIEVFDIIRNETNSIKNYMSENNGR
Ga0183755_10032008F104032AGGAGMAISGKVYGKSEFSVGIKAKDAANIATAAAADGAYKLLPVINVSAPVLNFIESGEIRSNNTGMIETDKDQFRSSKGGFVTLDFEVPAERNYIVRLLANVLQDHTENTGGTNVIHTIQAANGALLSRPDFTASSSAGVPSLFDIGLYYPSSSEDKLITSAALQSLTMNFDMTDGRLLLSGSFYSGFTSSTKFLTEQNLSVAVDPIAASASPAMPIESYFDVKKLDVDGQTLTDIVVTAVSFTFENNLARVGRDSNGDAEAYAFGIPAVSITGELSLMYDGNVNFAATKNVLQDFIDGNTATLKLQQGDGTVDAAELGEMNIECEIYSTAVNLDPNADTGAIITIPFKVVQPTDANGDPTGTAFKFEFNDKYASSTW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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