Scaffold Ga0183755_1002774

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1002774
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9078
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F000896	Metagenome / Metatranscriptome	845	Y
F033113	Metagenome / Metatranscriptome	178	Y
F037814	Metagenome / Metatranscriptome	167	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100277413	F037814	AGGAGG	MEISLAISILMLLVIIVSFTFMLKELKECQKIIKKMQRRSRKYMREVVSND
Ga0183755_100277415	F033113	AGGAG	MLKTIEKKIQLFVQGIGGIQRQEIVHGTLYVKLDNDRDCDFIHTEIRKFYKEFINPEGGVNMYAVGDEFAFDFVPEDRETSVFSDDKESLYGIWSGFAEEGLAEDFGDELEAEAEIQMQLDQDAKEGR
Ga0183755_100277416	F000302	AGGAG	MVETMTQDTKDRIAEMERQKIELENRLEMLGYSGNLVKMHQIEEEIYEIEDTIRKLLP
Ga0183755_100277420	F000896	GGAG	MTNKINLVINLSILALLIYLAVSIKTLQDKVFPDPNIMIPLMGYDNSKTELEYNIRTLLNNALTEAINEQEKQ