Scaffold Ga0183755_1002327

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1002327
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10066
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (82.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024203	Metagenome	207	N
F047364	Metagenome	150	N
F096075	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100232719	F024203	GAGG	MMLNELVSKWQREMTDTEQYHAQAIDMLENRIAKLESKHKTVTKQNELLMEMLSKLIRGKNE
Ga0183755_100232722	F096075	GAG	MKSHSKAYYSTQEATELMFGDTPSNRKRLLRLLQNGEVKGKKFGKRWFVYASEINGEGNEQSW
Ga0183755_10023278	F047364	GAG	MPKTDFQVFKKQARLSKTKEKYIDVLLAMNVLPQCNEPMARMTLEAYWVYYTELSDSERRMRDVTRFVHGYVSKNIQDKLFS