Scaffold Ga0183755_1000141

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000141
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38450
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (84.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F028314	Metagenome	192	N
F042628	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100014111	F028039	AGGAG	MTTLLGRWETIVKQIRFENNWAEILKSYLEEQKLDELPEPEWSDDPTMAYVYLPARSLNGELVRYDKTKARMFPESIVGYLEKGGLMKLPAKVAASKTKEQLPKMETEKPKLDKKIEKLGDLQDE
Ga0183755_100014114	F042628	N/A	MGKYNKSNKNNIFRDKPEITISEHNVVKNGKKMKIVVPEGKIGYGDVESHAQMAGDLATKHSDDNKAGEKAYEEVRRHRDTDSGSTIEENKLKVAYGKMANRMPVIQQFNITDNTGKHIATEYLFMKTEPSGLTRPLKIRVDLDTGKAQEIPV
Ga0183755_100014122	F028314	AGTAGG	MMKLFTSLMPLIPQPYKNIVKFFLATLKNVDEKEELERIGKLFADILEDGTVTPQEWLSLAGKNGLGILKGNGK