Scaffold Ga0183755_1000089

Overview

Basic Information

• Taxon OID: 3300029448
• Scaffold ID: Ga0183755_1000089
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46179
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (72.60%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Mediterranean Sea: TARA_023
• Coordinates
  • Lat. (^o): 42.1735
  • Long. (^o): 17.7252
  • Depth (m): 55

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001711	Metagenome / Metatranscriptome	648	Y
F045429	Metagenome / Metatranscriptome	153	N
F063094	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_100008950	F045429	GAGG	MNWLYGISYLVGICLSVSPLYAQSSLKDLQQIQLLSQDECVIVQVNADWNFKSSLDLNGLNNCVWFNASIDDKEYGAIITNEWKIVSVPTIIMFEYGKEVKRFEAGLSFNLDKNKIIKEIKDEIDEIQLRKFQ
Ga0183755_100008953	F001711	AGGAG	MAKKIAEKAVESASAVKMVEIKHLRSMKDEAGKDVSVVDWTESKSADEAISQAEANLVVAEAKVTELKADIVEYKKIKG
Ga0183755_100008961	F063094	GGA	MKECQHCNEPNHEGHFNCPSCGLRAHPAKWSTQFVLRDSPMATAIRKDQIDFGTMSMDKHIERTNKKNEQERAKKVDSMIFGKDK