Scaffold Ga0238435_106727

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0238435_106727

Scaffold Ga0238435_106727

Overview

Basic Information
Taxon OID	3300029349 Open in IMG/M
Scaffold ID	Ga0238435_106727 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1186
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location
Location Name	USA: Iron Gate Dam, Klamath Basin, California
Coordinates	Lat. (^o)	41.93	Long. (^o)	-122.44	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034906	Metagenome	173	Y
F077230	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0238435_1067271	F077230	AGGAG	MNKWVRGGLILLVVLGLLSTGHNKLFPPPAGKIPDGVIENRKA
Ga0238435_1067272	F034906	AGG	MNKVEKRIKAAADQAVRQRNYQRARQRAFTRLANTYPDVYRAYLEEEKQADEKMGKKWLDIDGNTSTTKHRS

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