NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243736_1000189

Scaffold Ga0243736_1000189


Overview

Basic Information
Taxon OID3300029341 Open in IMG/M
Scaffold IDGa0243736_1000189 Open in IMG/M
Source Dataset NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 026_10_29_stool_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)109393
Total Scaffold Genes110 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)110 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095494Metagenome105N
F096287Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0243736_10001896F096287AGGAGMQRIQKRRAGQRQTQNALIGLLSAVSMTRVGLTQLLPLCGSAAWWLSAACMLPGLCVYGAFRLLLRRAHTRTLTDCARKLLGNFGGILIMLTLTLPLLLDGIASLTALITFFTEGIGARGSQFTLTLLTASVMLIALNRDGLPRGVYLLRHVLLVAAAIIAINALLDAHPDGIVPLLGEGVPPLLSGIRSAWGMSWMLLLLLEFPAEEGTRRTPVMFVALLPCPVILLLLSLAIPPELTVPGRSLASRLALPTLFLQPAVRTLAQCLLMMTLFLSIAGSAQLAARFLTSSCQKPKKWVPYALIGLLTLTQLFDISRLWRVLTAFTAWSLAPGVLLLLVLTIARLCRREKA
Ga0243736_100018963F095494GGAGGVSDPKEKEVQAILQAIDYGHLPPRETQRRLLNIIQAEAARTDAPTDETKIHTCMDLLERLQGEQKPIAPARVDVLRQHIAAAHQKNERKRQKRKKIIAAAACSAAAIAVAFAVSHPLLWYENWTTADEQQHFVTSHEIAIEMLETAVADPTLPSGDTVEVQSISALDALIGRKTGIPEMVNGQWELQHRYVNFTRSGISISLMYVNAADAQQTIVGVINLISNPQYMMLSFEQSYEGTIQQFDGLNFYITENINKPVALWQGDDKILLFSGRTSQEEVTSLLRTIIREIGE
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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