Scaffold Ga0242823_1000802

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0242823_1000802

Scaffold Ga0242823_1000802

Overview

Basic Information
Taxon OID	3300029339 Open in IMG/M
Scaffold ID	Ga0242823_1000802 Open in IMG/M
Source Dataset Name	Human feces microbial communities from a patient in hospital, Baltimore, Maryland, USA - 015_6_2_stool_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	45845
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (29.31%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From A Patient In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location Name	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0242823_10008026	F055775	N/A	MAQIAQQDNLVIEVTTTAAALDDATKKKLIECIEGGTIADVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVAAIALN

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