Scaffold Ga0243718

Basic Information
Taxon OID	3300029338 Open in IMG/M
Scaffold ID	Ga0243718_1001267 Open in IMG/M
Source Dataset Name	Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 024_10_24_stool_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Institute for Genome Sciences, University of Maryland School of Medicine
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029338 Open in IMG/M

Scaffold ID

Ga0243718_1001267 Open in IMG/M

Source Dataset Name

Human feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 024_10_24_stool_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Institute for Genome Sciences, University of Maryland School of Medicine

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20442
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (37.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

20442

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (37.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location Name	USA: Baltimore
Coordinates	Lat. (^o)	39.28846264	Long. (^o)	-76.62594594	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Baltimore

Coordinates

Lat. (^o)

39.28846264

Long. (^o)

-76.62594594

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N
F106193	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0243718_100126711	F089590	AGG	MKGKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILAVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
Ga0243718_100126712	F075481	AGGAG	MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTADSVGVNKTRNDIKDLDNKIDIKSKDVDDKKGSRWPIVWIVAGILMILLVLVYIFKKIKVL
Ga0243718_100126720	F106193	N/A	VGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAKYIKP
Ga0243718_10012678	F042095	N/A	MAKTLYKYGASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHMKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIIDIPGLEFLVVSHTMYVNDGISVDKLSRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLGIFNTLDLRDIESSGIRNIKNMKKLQTLELSSCYLDRYIKEFNDLPKLTSLRMSPGPSDMWNYFDINTLPFFEVDKINPNITDFVFLNDWVSGERRTGWNDDNMSGRGLEHLTSFVAPNSNSLRMDKLPDYIYEMRAITWFNVHASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGQSNGSPDTPMEKIYVLKNNYAQKWTIKPE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0243718_1001267

Overview

Ecosystem & Geography

Associated Families

Sequences