Scaffold Ga0183748_1042916

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1042916
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1342
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030729	Metagenome	184	Y
F034754	Metagenome	174	Y
F092880	Metagenome	107	Y
F095400	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10429162	F095400	GGTGG	MSRHITDRDKVYLKLKRIASGCSLRAGEDLHPINDDLIPWLETNEDIDEYLNLLDVLTLMRW
Ga0183748_10429164	F034754	GAGG	MKVGDLVDINQQRGSGIYKDVIPRGLGVVVRFEELEDLHYPNIGSFNLGPIVHVLLNTGETEGFAPQSLEVVK
Ga0183748_10429165	F092880	GGAGG	MKAGDLVKYNSRLLLVLRPNPDEFGYCDGWWQCMEVGTNRVRIYSPTQLTVIKTVEQFYL
Ga0183748_10429166	F030729	AGGAG	MKVTKKKIEAILQKDERMKWVTLWYDRAGQQWVFVGGDACMWETSGTGIFRLDMLSVEEWVDYAYQLAGRKRYV