Scaffold Ga0183748_1008151

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1008151
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4593
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017325	Metagenome / Metatranscriptome	241	Y
F030784	Metagenome / Metatranscriptome	184	Y
F033075	Metagenome	178	Y
F103426	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100815112	F017325	N/A	MTGDYFQEVSKALKEFHEWNTTPQQKPLYMLIKVEVDKDIVYNQEQAEKYAENHCNNLEYALCDWYYPDDPQFPYIAK
Ga0183748_10081513	F103426	AGGAG	MTNIKTVTNTAFGKTLHYVVDDYYADAITQLTGKKTINDNDIIALMQLGLSVNDKTLSELIAV
Ga0183748_10081517	F033075	GGAGG	MENIKGNPMQNAYEQILRSYNPLEIKDILLHGAARKATKHKTEDDILAYYANHNEGIHHNLLDAKFEYCRSYLLCQAAYNRSEKTQEDQYFFLRDVVWLYIDAVADELGDEYKLHNKPRKEIEDEVLAIDLEFRKQQLQVIDGGKS
Ga0183748_10081518	F030784	AGGAG	MFNTYIEDKAMIPVLLAYDWLVAHGTWTDCPYETYVSLKKKVIHNGNAVPYVH