Scaffold Ga0183748_1002342

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1002342
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10565
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F041145	Metagenome	160	N
F044427	Metagenome	154	N
F046317	Metagenome	151	Y
F059445	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100234210	F046317	GAG	MNKEDKVKYFEYLVNSYDMGIAKIQGDHPDEVRVAIDSFFKAAKILVDHPEIQTIPTEYVNKLLASLAQYPQYHRLVTDLLVIIQQGEDYEA
Ga0183748_10023422	F044427	N/A	MSQPVKYSKEIKQMRKVLNDHEYTRTLSPGYHQFLSDMHRKMVSASKITPKMEKHIKQAFDYYNNHNNPEIKANRDRMLAKVTKLKSMLLKCGYTQQYERERMDFLDNLTDRIYVKGNLTPKQAKWANSMYKQFNKKLLP
Ga0183748_10023425	F041145	AGG	MSRPANISHDNLLKKLEMLVKLCEETEPTPKQLLKMSGEKNADMTDLFTPEMIDAKFYLEEVKAEEYDNYSVIDIMRACNTIWRWRMKVKKDGWPDMSSIEYICGEHIKKNEKITAIKRYRQYMKDRDKEVGLKEAKDWVDRLAIKMDLD
Ga0183748_10023426	F059445	AGGAG	MKLHEIVDSLIELSTHEMPEEARQSLDDAIDHIVSSMTEQELQGVLGKTMMDEIKDLANFDVIGNPPPVWKEEGDEEEIQAIKSMIEGNIAIA
Ga0183748_10023428	F012123	AGG	MIKRNPCKVRKKTYTDNGVEYIERRGYAQERKTIDGEEQVFVMEGGDTGIGYWYPSSDVQLTKGKWSNAKRQ