Scaffold Ga0183748_1001058

Overview

Basic Information

• Taxon OID: 3300029319
• Scaffold ID: Ga0183748_1001058
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17088
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (94.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Red Sea: TARA_032
• Coordinates
  • Lat. (^o): 23.36
  • Long. (^o): 37.2183
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074049	Metagenome	120	N
F094417	Metagenome	106	Y
F099889	Metagenome	103	N
F101903	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_100105812	F094417	GAG	MVTGENKFEKGDLVTRMIPSHYTEFQHSDAIGVVLKVNFPLARVYFYDTHKEEIWNQKVLAKISKGIGHDNENR
Ga0183748_100105819	F074049	GGAGG	LNNLDYKPELEYDIWQPSEIKGRPDLNVTIRLVPITERAEQRVEEYGDVMKLMHISHSGPFECNEEQILVMSLNEKWQGWFRNGTDVDFELT
Ga0183748_100105830	F101903	GAG	MLHRKDILEFIKRYDKTFEIKENIYYAGKAFKTNSVINYLGEMKDDDNLHYDEAEQVLNLLIKYLRGEADVLWDEGRVLFKLLEGAQHEQDSDSGEEEGQEES
Ga0183748_100105836	F099889	GGAGG	MTKQEFKQFCIDNNLRYKKDGCGDPISPSRKGLKTDQIYWTGEEELGIYAERETQKKFTFLKQKLVREYGLRLNQEGDTDATFYATKEQALKVASFLGCAKNAVSQETRDKMSRLLKERLHNG