Scaffold Ga0185543

Basic Information
Taxon OID	3300029318 Open in IMG/M
Scaffold ID	Ga0185543_1005540 Open in IMG/M
Source Dataset Name	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029318 Open in IMG/M

Scaffold ID

Ga0185543_1005540 Open in IMG/M

Source Dataset Name

Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3319
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3319

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Indian Ocean: TARA_038
Coordinates	Lat. (^o)	19.0393	Long. (^o)	64.4913	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Indian Ocean: TARA_038

Coordinates

Lat. (^o)

19.0393

Long. (^o)

64.4913

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10055401	F042906	GAG	MPLIKNNLYYELTTETQTKPVSAVKIQMDVLDGCHHKCPGCFVHRRGNASNIDQLAQAKEFVKNITDRGILVDEVLIGPTDFLASENFYEVMPELEDMINDNSPILAFVSTLIDGDIVQFCDWITERINLDTEIEIGIAINPHKFSEQTYLQNIKDKLWYIDRNLMHEVTYTFVVNIRDYGLDYTVLHDKAVKEFSTILDFIPSVSRSHKPNIILSTLSKFNEYFNEISKDTKLNNIMVDHSHAGMNYTVLNYKRGDWYLSPFMYENMAIYDDSLKVESFDDVVPITESQINRAKGTECEDCPLFFSCYNRKIILLRDYLGVKHCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKRG
Ga0185543_10055402	F042905	GAGG	MIRLNDTYAGYYTYDKDHSPSNVDFLRTEINLDILHGCDQMCPGCFIPRKNLTNADHLKDLYELLVNGSYHPDEIVIGPTDIFDAQNFEEIMNHEYMFKLYEISAIGFTSTLLQPYWVIKEKLEKIWSLYAHIKRIPDIDFKIVLDVDKYLDGELDDWYKKLKLFVNGSVQFRVNYYKGVFDRISYNELCQKAYDDFHAPVVITPSFLTDRNARGKVEQHLANFRKDMLDQKIDDKWKEYYTFFDAKFNGYGCQNYSFYNGKLYINPFLYDAIIQRTPFFETTMDENKLYDNIEYAQQVDDCNGCEYMMSCAERNVHMYMESRDLNSCVAIKEYMYATH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0185543_1005540

Overview

Ecosystem & Geography

Associated Families

Sequences