Scaffold Ga0239302_100944

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0239302_100944

Scaffold Ga0239302_100944

Overview

Basic Information
Taxon OID	3300029314 Open in IMG/M
Scaffold ID	Ga0239302_100944 Open in IMG/M
Source Dataset Name	Activated sludge microbial communities from Sewage Treatment Plant in Aalborg, Denmark - MBR_Gel1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Aalborg University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	19054
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge → Comammox Microbial Communities From Various Environments And Locations In Europe

Source Dataset Sampling Location
Location Name	Denmark: Aalberg
Coordinates	Lat. (^o)	57.049957	Long. (^o)	9.865377	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022276	Metagenome / Metatranscriptome	215	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0239302_10094410	F022276	AGGAG	LGELLVVAIAFGIIFGARKFCDLIGAPIWFAKFLFICVSLVATYFLAEASIPEYNKPWGVWIAMVCASFGIIAVGFILFQQIEKEENDRKARLSRDTHHF

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