Scaffold Ga0183683_1002445

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1002445
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6860
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002281	Metagenome / Metatranscriptome	575	Y
F034750	Metagenome	174	Y
F087891	Metagenome	110	N
F089521	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100244510	F034750	N/A	MQIKKIEIEIKKDTPKRPKKDNSKKGDIFLNCRCCGVLIRPDWYSQIDKRYCADCL
Ga0183683_100244512	F089521	AGGA	MKYIIINKWQLKDSKIEPSYYIKEVVDTLEIANAKLKAYQIIETDKNDNYFIVPFNEEALLLTEEVA
Ga0183683_100244516	F002281	GAGG	MFNRSWKMKINHKIVGEHLGVPLRGDETFDELLKIEQQVKEHKERQQRIAEENANIQRVDAQTKKYWGK
Ga0183683_10024459	F087891	GGA	MTDKNYYIGLSDISFYLTDDDGNIKTDKNGNEITYRLKDGIRYKPLEYITEGIELDMIEK