Scaffold Ga0183683_1002343

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1002343
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7044
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023368	Metagenome / Metatranscriptome	210	Y
F056050	Metagenome	138	Y
F101291	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100234317	F101291	AGGAGG	MKDNWIGWNYKSRADEIIDLVLDEVNDMLKKNKIKINYQYDDDNEEGWDYFLELTKEYNGKEI
Ga0183683_100234318	F056050	AGGAGG	MKKDKKEITMKDFDDWLSECPVPYEQTCSGLNTTEYYSFDLIDCEMEEDDDEG
Ga0183683_100234320	F023368	N/A	MHKYNKATTKYKDIPMEDKIFIYLDKQDSNEADKLSMFLSNLSMPSMCCGWISEEHFNNLLEKYKIDITPYVKDDERITTSIKSEIADEMFNLISNGKYKKRNLIKVLREKFKDVNAGVIHRLIKKNMDLRILEIDRTYKTKPYVIKGKYYIGGK