Scaffold Ga0183683

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1001682 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029309 Open in IMG/M

Scaffold ID

Ga0183683_1001682 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8760
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (84.62%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

8760

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (84.62%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

South Pacific Ocean: TARA_100

Coordinates

Lat. (^o)

-13.0023

Long. (^o)

-95.9759

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010471	Metagenome	303	Y
F012529	Metagenome / Metatranscriptome	280	Y
F021206	Metagenome	220	Y
F049285	Metagenome	147	N
F058518	Metagenome	135	Y
F062259	Metagenome	131	N
F096197	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100168213	F021206	AGGAG	MTTVTLNQLLEMENVLATRKIPSDIAAMAKAKRYSESKQKVITLGEQPLHYVLRILAKEGLDK
Ga0183683_100168214	F010471	AGAAGG	MKQLTLAVNKEAHPEYSDNQIAQILGLLPLWVAEHIGNDDGTDLVQFMTDRYGCGRLYKFEGTVNEEGDYVSSYEEDPDLPYMGKMITKDGYAYFYDYAIVALPQPDGKHFITRMD
Ga0183683_100168216	F096197	AGGAG	MTNFTKPQLKSLRAEMQSLLLAHDFNETTDTEIQSINVDSCSYRGGEAIFKVKVLLEGAKTKEEKDLKKMAILHRLDKSKVHEYIDHKSVRYRMQLVGYKTKARKMPWIVEDLLSGSEYKLTDAQAIQWFEYEVQP
Ga0183683_100168217	F058518	GAGG	MKYKEIVIAEEDLECDQIDTLNEAIKKHILDIGEATPTTLTGFNWRIDVRMRMDNYDT
Ga0183683_100168220	F049285	AGGAG	MKLIKVRVNKTIEYEVSVPVQEDHRYEQVRDHLQNIDWEREIEVSPQNYKHIAEYYDWLDWETDNED
Ga0183683_100168221	F062259	GGAG	MKTEKELDSEVREAFDRAIDAIMFDYMYMGTEKGRDNLEYMGFKHIETREYIKIPKCGVAFRKKKETENA
Ga0183683_100168225	F012529	AGGAG	MLEDKTYKVKVGEYHDAVIYVYERHRKCLNPKDEPEKHKWKHWKEVVTVIPVYNGFDDYQDKSGNFHNNIRVTVDALSELYGNSPDYEMGVSYTMNTHQYINV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183683_1001682

Overview

Ecosystem & Geography

Associated Families

Sequences