NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135226_1012663

Scaffold Ga0135226_1012663


Overview

Basic Information
Taxon OID3300029308 Open in IMG/M
Scaffold IDGa0135226_1012663 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRB2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Haifavirus → Haifavirus tim68(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)3.715Long. (o)105.408333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023620Metagenome / Metatranscriptome209Y
F036278Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0135226_10126632F036278GAGGMTDTRGYQPEGVKYTFPDDDPYQEGNEVYYNMVDFLDDSEVHQIWEIVGKALDRNNIVTSDNESLSVRVYDELSDED
Ga0135226_10126633F023620GAGGMKTELFLSEYDLSTVYYLCSFYMDNADLDFQDKAYIKELQNRVDKLMEVSK

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