NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135212_1002337

Scaffold Ga0135212_1002337


Overview

Basic Information
Taxon OID3300029306 Open in IMG/M
Scaffold IDGa0135212_1002337 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SCH3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1154
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063649Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0135212_10023372F063649N/AMADKLVDMKKLVARYETNAFGALSKQDKANLAEDVDAALETEASSIKINATPVEARYLPRLADIQQNIYSVLGSESRKLADASVRNYHETLSAEEVKLLGVVTRSLCQLGDMERGLRQNDQAPLDRDWE
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