Scaffold Ga0135222_1002190

Overview

Basic Information

• Taxon OID: 3300029301
• Scaffold ID: Ga0135222_1002190
• Source Dataset Name: Marine harbor viral communities from the Indian Ocean - SRH1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1217
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Indian Ocean
• Coordinates
  • Lat. (^o): 1.26600833
  • Long. (^o): 103.8333333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012581	Metagenome	279	N
F023748	Metagenome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135222_10021902	F023748	GGAGG	MSKEYKYTYRFSEQTVDTRYYKVESNKKLTYHEMQDIAWSAEQLEGSTYEDEDGKATFEGTEYGDDAQYQMEEGEEDLADD
Ga0135222_10021904	F012581	AGG	MKKIKMPKFTLYAKKVFYYRKEINARDMKTAEKRGDQYESERLFIPIGEEFYITSIEENEDDV