Scaffold Ga0167843_104410

Overview

Basic Information

• Taxon OID: 3300029202
• Scaffold ID: Ga0167843_104410
• Source Dataset Name: Polluted lake sediment microbial communities from Telengana, India - LAKES1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Gothenburg
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2970
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Polluted Lake Sediment → Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India

Source Dataset Sampling Location

• Location Name: India: Telengana
• Coordinates
  • Lat. (^o): 17.5741667
  • Long. (^o): 78.3563333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029768	Metagenome / Metatranscriptome	187	N
F073597	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0167843_1044103	F073597	GAG	METGCFVLQGNQFVAGGNKFVLKRRKKPTPNKPELFLIQLQPFKYISSLFPAGEEGLYTFDYERQLYILKKGEAQIVITEEE
Ga0167843_1044104	F029768	AGGAG	MLDSVLKEQAKETVIPALNAIYSEQELNKDSQISVRLERGLYQALEAQTERFGFKNVSQTLRAILTFYFLPVAYELELKNKSVSDFKRFIELKQRDGYSLEQAKENYFLFQTVEYLEFLEQAKVMSNHSIRFMERATEKMNSILQETEKKIEQAIKEIEQEQEK