Scaffold Ga0167843_104300

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0167843_104300

Scaffold Ga0167843_104300

Overview

Basic Information
Taxon OID	3300029202 Open in IMG/M
Scaffold ID	Ga0167843_104300 Open in IMG/M
Source Dataset Name	Polluted lake sediment microbial communities from Telengana, India - LAKES1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Gothenburg
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3025
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Polluted Lake Sediment → Aquatic Microbial Community From Freshwater And Polluted Lake From Sweden And India

Source Dataset Sampling Location
Location Name	India: Telengana
Coordinates	Lat. (^o)	17.5741667	Long. (^o)	78.3563333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029768	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0167843_1043001	F029768	AGGAGG	MTDTMTETAVAVNALYSEQELKKDSQVSVRLESGLFEALETQTEVWGFKSISQTVRAILTFYFLPVVYELELKNRSISEHKEFLKEKQEEGFSLEQARANYFTFQVVEYLEFLEQAMVMARHSLKFMESTSDKMNGILKETVNKIEQAMKELEQVAE

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