Scaffold Ga0168819_100099

Overview

Basic Information

• Taxon OID: 3300029114
• Scaffold ID: Ga0168819_100099
• Source Dataset Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI021214-33
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 147666
• Total Scaffold Genes: 191
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (34.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location

• Location Name: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074964	Metagenome	119	N
F090484	Metagenome	108	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0168819_100099150	F074964	N/A	MITKKNVNKLQNAVIKENAANLVGAVKLYNALFANGADLKAICKALEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVDDTFVKFALYSKVYKDTNADKEKGVEAKTADWCADNVVYGSEYKSFGFTTAESLETKKSTKWLIKENDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
Ga0168819_100099174	F090484	N/A	MDISKNPSDFFLLQIMKLQLGRNINISLRLLEQWSSDSLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNITGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASSMAKEAHKDFWDGYERSTQNQIIRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTATDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISVQSLPNYNTTVGNDKELDGESVFKDIPFEELSFYNDTYLYPSSQYSSL
Ga0168819_1000993	F099406	N/A	MAEVGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDYVNKKYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGGKVLESLGMVSTGVDSTYLDLSMFSGNSGTLDEASFGKVLDAYNNKITLGKLAGNYYSLDYFLSGKDLGGVFELKIVFVSFSDTNTGEGTSESDIEIQVGTYTVTQDKAYKVLSNMVTLSNTMMSYLRFMSKAPRVVTTLVNLPKDTHNIIANVASATSLSMTVSAEDVGREWQVRVNNTTGNDITQPLPTSGLFQSMSGDSVIVPKNSFIELSIWYINDKLVIRVGEQA
Ga0168819_10009939	F098313	N/A	MKEKEFDFVIYPLKLIITIGLDYKTLCDRFENAELDHEGEWGDEGDLDSEVSFMNLVRDKRDDRAFKLLWNFQSENDMTTQNICHESFHAAMSVCQHCNMSLGFKVGEDEHAAYIAGFVGNCADEMFGFLEEEKDGKEN