Scaffold Ga0169217_100184

Overview

Basic Information

• Taxon OID: 3300029097
• Scaffold ID: Ga0169217_100184
• Source Dataset Name: Human fecal microbial communities from infant at 12 months in Denmark - 179_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63381
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (42.86%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.676097
  • Long. (^o): 12.568337

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F058555	Metagenome	135	N
F075481	Metagenome	119	N
F078006	Metagenome	117	N
F083452	Metagenome	113	N
F089590	Metagenome	109	N
F089592	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169217_10018419	F075481	AGAAG	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTADSLGIDKTRNDIKNMDNKIDIKSKDVDDKDESKWPTAIIFISILGILVVLFVLLKRLGLIK
Ga0169217_10018420	F089590	GAG	MKDKDMIERVGGLWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
Ga0169217_10018422	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIELSNVGQRMTEMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLETLNLSSCYLDRYIKEFNDLPKLTSLNIAPGPSDMWNYFDINIIPSFEVDKINTSIEVFAFLDDWMNGERRTGWNDDNMSGRGLEHLTNFVAVNSNSLRMDKLPDYIYEMRAITGFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVAAYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA
Ga0169217_10018430	F089592	N/A	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIMSMSNIDDKSKTKKVKDIKKKDDVEEGDKIKEE
Ga0169217_10018442	F058555	N/A	METKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAKSLVCPVDYKPVTNKNGKKVTAIKYSNKKDNIRGSGMVIGKKCKQVVAYLTIVNIQKHVFLRNRMREGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALPDIMIYSYKAKKNEDMKDIFVGKKRSVYKCLDKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKSISDLYDEVKKNNGVANTKDRKNVTIGCLRLLYKGKYMHILISTEYIRDVFLGEKSSEMSKAG
Ga0169217_10018460	F083452	N/A	MSGRIKIKPKNKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGLVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYVKRK
Ga0169217_10018478	F078006	N/A	MDNVLKRAAAELKEAGCRVFAWQDDTYNRSWSKGDYIMLYYAFPDSPNIGYLSRGEYGMSVAYSRAYIPSRGSGSGCHIKEEATFDLETALDVLNGPLPSWCKAYGVYPKQYKDIDGWYNNNNYNKKLFKEI