Scaffold Ga0169599_110085

Overview

Basic Information

• Taxon OID: 3300029047
• Scaffold ID: Ga0169599_110085
• Source Dataset Name: Human fecal microbial communities from infant at 12 months in Denmark - 263_12M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2145
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078006	Metagenome	117	N
F085718	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169599_1100851	F078006	N/A	GDNILRKAADELKKAGCGVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCRVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
Ga0169599_1100853	F085718	AGGAG	MVIEFDFEIYENGDYDKVYLRDGKEARVLCDNGKGNRPMVVMVEDDNANDYIVLRYNETGRRDINSQSSLDLMLSVKEREPESWVVVISYMDNKDQGQKMVLPNFFSRNIRGDIYLQGSPKSSVSYYVDKLEEDKCLDELCEKIRVKRDRIYNMEIISLSDDEETV