NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000033

Scaffold Ga0308309_10000033


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000033 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)136333
Total Scaffold Genes123 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)88 (71.54%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005311Metagenome / Metatranscriptome405Y
F005887Metagenome / Metatranscriptome387Y
F006072Metagenome / Metatranscriptome382Y
F008092Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_1000003313F005311AGGAGGMGSGICGSALVRAANAMLTALGGDDVSLLLPATATASDAAGQLGLVDPGVQEVIITPVVAHSLPTGNLGPRRRIEFTLPASALELQLPTLGMGTAEELFNAVLGLVYDGDLFHIEAVVTENFAGTAYFYVVTAVE
Ga0308309_1000003317F005887GGAMGVSDRELVLKAIDIEFQREVLDKLVRLETKMDALVGNGQPGRMKMAEDKVAVLERNDLRNSVHNRLVNGAISVAISVAVALHKYWLR
Ga0308309_1000003318F008092AGGAGMSTTPSTTIITNLKSATLSTANTLKSAGAEGIDMPGMLALALSKAAELKVCLTLIVRSTDSADPNLTTLNDILASLT
Ga0308309_1000003344F006072GGAGGVLKTAAVVVAFLSLMLLPTISRAQLLPSGNVYVGVSYGDTVDVVNRYTVRGWNASVEEIPLPRFSYLGVVLDGSGFYRKGLQQYNALLGPRVSKNFGKWRVFAQVMGGAQRTTSGGMTHYPVVEDGGVGVDHKFHLLFMKNFSWRAQFDYDRSRLLTATQNDFRGSTGLVWRF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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