NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247609_10132692

Scaffold Ga0247609_10132692


Overview

Basic Information
Taxon OID3300028888 Open in IMG/M
Scaffold IDGa0247609_10132692 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2462
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057035Metagenome / Metatranscriptome136Y
F064301Metagenome / Metatranscriptome128Y
F079361Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0247609_101326923F079361N/AMIYFTIAKNECGYLLDSISENYEVLKNKFPDEKIYKSDEPIVSIYIIKDQLQEYNG
Ga0247609_101326924F064301N/AMAKKSGITKAAVYGPTKVQPIWQIGMLFPDGKKISKPKCTLNEIFNTYFINLDKYLNKGLSAEELLNKYKETFDKGNIKVQINYIDSWGHTWKGKVAWPIQDKFIEYLNKRLNND
Ga0247609_101326925F057035N/AMTEKEFLEKRTPIWLEGEDLHISTPSTSDRNDFHAFLSKKYGYNWMFAIRGYYWPGSHVSLYIGDYECPNCTLLVSSYIFSYFPDIKYVGFGCNKGNPGEIWPNKIIVARDLNCLKDDISNQQSEKSI
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