Basic Information | |
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Taxon OID | 3300028886 Open in IMG/M |
Scaffold ID | Ga0256407_10000012 Open in IMG/M |
Source Dataset Name | Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 401138 |
Total Scaffold Genes | 505 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (14.46%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales | (Source: IMG-VR) |
Source Dataset Ecosystem |
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Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: Alberta | |||||||
Coordinates | Lat. (o) | 49.6935 | Long. (o) | -112.8418 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F028722 | Metagenome / Metatranscriptome | 190 | Y |
F042680 | Metagenome / Metatranscriptome | 157 | Y |
F051619 | Metagenome / Metatranscriptome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0256407_10000012184 | F051619 | AGTAG | MSDNVINWEQVRIDASINIMNAILSNSIMVFILQFLFKKQISDIAVKYADKLIEELKK |
Ga0256407_10000012282 | F042680 | N/A | MVVQDIKPLVKGIAQLQYVLAGGIAVYKIIAVDGTEYQLEIDVSNKNDVGASASFNTTEKALLLMRWIRKANENDTLIKIKG |
Ga0256407_1000001248 | F028722 | N/A | MATFENGQSCLEKRGIDERSNEINKSDYNELRPYGPTHKDALSDGDPQGKGTGHGGHNAWQPDCTKPTNMIDYSNFDTFNGGGSYDINGRNDVGGREKSIRSSKYNYENQYGADLINTAENIAQGQYYIGQTIKHL |
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