Scaffold Ga0272443_10023610

Overview

Basic Information

• Taxon OID: 3300028883
• Scaffold ID: Ga0272443_10023610
• Source Dataset Name: Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Acet-12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4481
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment → Marine Sediment Archaeal Communities From Little Sippewissett Salt Marsh, Falmouth, Ma, United States

Source Dataset Sampling Location

• Location Name: USA: Falmouth, Massachusetts
• Coordinates
  • Lat. (^o): 41.5758
  • Long. (^o): -70.6394
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008501	Metagenome	332	Y
F042291	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272443_1002361014	F008501	AGGAG	MMLKKSAVDLTDLAIGIVVLGIVVSIGATILINVRDTSDASTTAWNLSQDAATGLAEYGNWFDIIVIVGVAAVILSLIFLAFGRRTAGGMTY
Ga0272443_100236109	F042291	GAGG	MPIYQAFNNKIKAWVKYSFESGKGFTPLDVKQKEPLKPFKGVPKKGKKR