NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307277_10254154

Scaffold Ga0307277_10254154


Overview

Basic Information
Taxon OID3300028881 Open in IMG/M
Scaffold IDGa0307277_10254154 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021173Metagenome / Metatranscriptome220N
F061624Metagenome / Metatranscriptome131Y
F064462Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307277_102541541F021173GGAGMATPVIISLLVGLVAGGAFVAMWAANRIEEEGVRQFDRGFERGRWLTDITVAKAIEDQERDRRVGLLVAGSRPPGAQQPARPPGQEPRPSLLVLP
Ga0307277_102541542F064462AGGAGMSADPVVLAVLVVLATLAAPLTADWRRRLATRRFDAVYERNLLRRTGRG
Ga0307277_102541543F061624N/AEGLGWSVVRLVEDALPALDPVRRRVPGADDEGAFLAWVYTLAVDEALDRLAARGLLTPPATAVTAVRVTDPALAGAAL

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