Scaffold Ga0307277_10001292

Overview

Basic Information

• Taxon OID: 3300028881
• Scaffold ID: Ga0307277_10001292
• Source Dataset Name: Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9707
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9206
  • Long. (^o): -106.9489
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001239	Metagenome / Metatranscriptome	740	Y
F004912	Metagenome / Metatranscriptome	419	N
F027043	Metagenome / Metatranscriptome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307277_100012921	F027043	AGGAG	MPATSGTTASLPQIEVARVKPVDQVPSNARLSDDVVDLMKAFTLSSAEGIGGAWGAPLRPPTPFDERFGQWETRLWPQ
Ga0307277_100012928	F001239	GGAGG	MSSNEAGLLDAVAFIIGGQQEGATPQGFETHWRRTVHGREIKYQSIGPYVGFGQANDQHRDSGHVRIDVTVTSPTKCVFKRVVTTEYSRGANRESFGDATSEVATLDFNKVHRFDIEDGDSPNVVIEGTGWMCKQGGCQDIVKIGISAPRQEEARAIESKRHAIDFIKKACPGLPRDR
Ga0307277_100012929	F004912	GGA	LVVLLVTPTSVAFGEDPSPTVGKYSCSVDNIVGLQTNSQTGTRFAGRIDADAQQKFFITIEENKQLPEDQCFSVDALDDLKKLRRGEKPGTNSKAHFLDPLMFFTACQAQFRLSTNGSPIDSLYHSDNLNIFRDEFSQFWIKNGLSYIWQFHDLKGNAYVAEGKCEKIN